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BCH2IBM Introduction To Biochemistry & Molecular Biology

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 ‘Protein-ligand interactions’

One of the major tasks of any scientist is to present and explain their work to others. Scientific research and the related fields of medicine, nutrition, agriculture and many others rely absolutely on sharing new discoveries and insights. Scientific research is reported in specialist journals and at scientific meetings where other scientists gather to hear the latest developments. New ideas and new explanations grow out of the work of many individual scientists who discuss their work together.


Proteins are the most prevalent macromolecule in biological systems, and they participate in the majority of cellular functions. They are immensely diverse, varying significantly in size, structure and function. Proteins are involved in a multiplicity of processes including cell signaling (hormones, antibodies and receptors), cellular transport (haemoglobin, neurotransmitter and ion transporters), cell structure (actin, tubulin, and keratin), motor function (myosin, dynein and kinesin) and metabolism. The function of proteins usually requires some form of interaction with another molecule. The molecule or substance which is bound to the protein to form a functional complex is referred to as a ‘ligand’. Many proteins interact with multiple ligands which can range from ions or other small molecules to other macromolecules, sometimes including other copies of the protein itself.


For this assignment you are asked to investigate, at the molecular level, the interplay between a protein and a ligand with which it interacts. You are free to investigate a protein-ligand interaction of your own choosing and that you find interesting (many examples are provided below to help you make a choice). You will plan your literature research, gather information about the protein, its ligand and the function induced by this interaction, and then use this information to write a report on the major features of the protein-ligand complex.

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