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BIOL460 Molecular Genetics

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Question:

Modeltest will now have printed the selected model to your screen as well as the values for its parameters. Because we will use this result for a Bayesian analysis, which does not need to us to specify these parameter values, we only need to write down a few details from the JModeltest output:

  1. How many different substitution rates do we need to specify? In other words, what is the parameter value of ‘nst’?
  2. Should we use a model that takes invariant sites into account? In other words, is the value for ‘pinvar’ > 0?
  3. Should we use a gamma distribution to describe rate variation among sites?
  4. Does the selected model assume equal frequencies of the four types of nucleotides?
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My Assignment Help. Molecular Genetics [Internet]. My Assignment Help. 2020 [cited 23 October 2021]. Available from: https://myassignmenthelp.com/free-samples/biol460-molecular-genetics/bayesian-phylogenetic-analysis.html.


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